真菌环状RNA鉴定及研究展望

胡雪嫣,张赟,杨恩策,杜明昊

CircRNA in fungi: identification procedure and research perspective

HU Xue-Yan,ZHANG Yun,YANG En-Ce,DU Ming-Hao

表1 不同真菌环状RNA研究比较

Table 1 Circular RNA of different fungal species

物种 Species 富集方法 Enrichment method 软件 Software 环状RNA种类 Type of circular RNA 参考文献 Reference Schizosaccharomyces pombe Total RNA In house scripts 42 Wang et al. 2014 Exophiala dermatitidis polyA(+) In house scripts 87-677 Blasi et al. 2015 Exophiala dermatitidis polyA(+) In house scripts 62-126 Poyntner et al. 2016 Ascosphaera apis Ribo-Zero rRNA removal kit CIRI 551 Guo et al. 2018a Magnaporthe oryzae Ribo-Zero gold kit/RNase R Find_circ 8 848 Yuan et al. 2018 Cryptococcus neoformans RibominusTM transcriptome isolation kit/RNase R CIRI 73 Huo et al. 2018 Nosema ceranae Ribo-Zero rRNA removal kit CIRI 204 Guo et al. 2018b Ganoderma lucidum polyA(-) and polyA(-)/RNase R CIRCexplorer2 circRNA_finder CIRI2 250-2 193 Shao et al. 2019