
新世纪中国菌物新名称发表概况(2000-2020)
王科,陈双林,戴玉成,贾泽峰,李泰辉,刘铁志,普布多吉,热衣木·马木提,孙广宇,图力古尔,魏生龙,杨祝良,袁海生,张修国,蔡磊
菌物学报 ›› 2021, Vol. 40 ›› Issue (4) : 822-833.
新世纪中国菌物新名称发表概况(2000-2020)
Overview of China’s nomenclature novelties of fungi in the new century (2000-2020)
2000-2020年间,我国菌物学研究取得了丰硕的成果,在新物种发现、重要类群新分类系统、资源保护与开发利用等多方面取得了重要进展。本文通过对世界菌物名称信息库Index Fungorum、Fungal Names和MycoBank进行数据整理,从中国学者的研究产出和中国的菌物新物种发现的角度展开分析,揭示我国菌物分类学的研究概况。新世纪以来,中国从事菌物分类学的研究人员数量、研究类群规模和研究成果数量都处于稳步上升的趋势,在世界贡献的比重逐渐增长,有1 491位中国学者在4 029篇文章和36部专著中发表了9 430个新名称(含中国学者发表的采集自国外的物种),占全世界新发表名称总数的七分之一,其中新分类单元7 120个(含新纲3个、新目24个、新科88个,新亚科4个、新属492个、新亚属3个、新组及新亚组23个、新种6 404个和新种下单元79个)、新组合1 868个、新修订名称61个和其他新名称381个。这些新名称隶属于11门43纲173目525科1 997属,重点研究类群为子囊菌与担子菌等。若统计采集自中国的新物种,则发现了5 458个菌物新物种,其中90%以上由我国学者独立或合作完成发表。在地域分布方面,我国南方发现的菌物新物种数量多于北方,而云南是发现菌物新物种最多的省份,占全国发现新物种总数的大约四分之一。
From 2000 to 2020, mycological studies in China has achieved encouraging progress in several aspects, such as discovery of new species, construction of new taxonomic schemes for important groups, biodiversity conservation and bio-resource exploitation. In this paper, the research progress of newly published fungal names in China, especially those from Chinese scholars are statistically summarized and presented based on the data retrieved from Index Fungorum, Fungal Names and MycoBank. The result shows that the number of Chinese scholars, and their research outputs have increased greatly in the new century, together with the increasing contribution to the world taxonomy of fungi. At least 9 430 new fungal names, including 7 120 new taxa (i.e. 3 new classes, 24 new orders, 88 new families, 4 new subfamilies, 492 new genera, 3 new subgenera, 23 new sections and subsections, 6 404 new species and 79 new intraspecific taxa), 1 868 new combinations, 61 new revised names and 381 other new names, were published by 1 491 Chinese scholars in 4 029 articles and 36 monographs, accounting for ca. 1/7 of all names published worldwide. These new fungal names belonged to 11 phyla, 43 classes, 173 orders, 525 families and 1 997 genera, among which ascomycetes and basidiomycetes have received more attentions. Most new fungal species were discovered from southern China, while Yunnan is the most important source of new discoveries accounting for ca. 1/4 of total in China.
菌物分类学 / 中国学者 / 新名称发表 / 研究类群 / 新种地域分布 {{custom_keyword}} /
taxonomy of fungi / Chinese scholar / new name published / research group / distribution of new species {{custom_keyword}} /
表1 2000-2020年中国学者发表的各类型菌物新分类单元及新名称Table 1 New fungal names published by Chinese scholars from 2000 to 2020 |
名称类型 New taxa | 中国学者发表 Published by Chinese scholars | 中国学者独立发表 Published solely by Chinese scholars | 独立发表比例 Percentage of names solely published by Chinese scholars (%) |
---|---|---|---|
新纲 New classes | 3 | 0 | 0.00 |
新目 New orders | 24 | 4 | 16.67 |
新科 New families | 88 | 18 | 20.45 |
新亚科 New subfamilies | 4 | 4 | 100.00 |
新属 New genera | 492 | 167 | 33.94 |
新亚属 New subgenera | 3 | 1 | 33.33 |
新组、新亚组 New sections and subsections | 23 | 12 | 52.17 |
新种 New species | 6 404 | 4 057 | 63.35 |
新种下单元 New infraspecific taxa | 79 | 53 | 67.09 |
新组合 New combinations | 1 868 | 759 | 40.63 |
名称修订 New revised names | 61 | 27 | 45.00 |
不合格、不合法名称 Invalid and illegitimate names | 381 | 189 | 49.61 |
总计 Total | 9 430 | 5 291 | 56.11 |
表2 2000-2020年发表100个以上菌物新名称的中国学者Table 2 Chinese scholars who contributed over 100 new fungal names from 2000 to 2020 |
命名作者 Author of new names | 新高阶分类单元 New higher taxa | 新种及种下单元 New species and infraspecific taxa | 新组合 New combinations | 其他新名称 Other new names | 总计 Total |
---|---|---|---|---|---|
蔡磊 L. Cai | 37 | 463 | 157 | 18 | 675 |
戴玉成 Y.C. Dai | 44 | 391 | 177 | 10 | 622 |
白逢彦 F.Y. Bai | 81 | 216 | 248 | 72 | 617 |
杨祝良 Zhu L. Yang | 32 | 292 | 142 | 12 | 478 |
王启明 Q.M. Wang | 61 | 160 | 150 | 49 | 420 |
庄文颖 W.Y. Zhuang | 9 | 279 | 50 | 4 | 342 |
崔宝凯 B.K. Cui | 33 | 200 | 89 | 2 | 324 |
张修国 X.G. Zhang | 15 | 272 | 11 | 0 | 298 |
张天宇 T.Y. Zhang | 1 | 242 | 3 | 5 | 251 |
刘新展 Xin Zhan Liu | 23 | 23 | 102 | 29 | 177 |
朱宇敏 Y.M. Ju | 7 | 84 | 64 | 3 | 158 |
赵瑞琳 R.L. Zhao | 8 | 137 | 5 | 3 | 153 |
卢永仲 Y.Z. Lu | 19 | 87 | 41 | 5 | 152 |
陈倩 Qian Chen | 10 | 50 | 80 | 8 | 148 |
罗宗龙 Z.L. Luo | 14 | 120 | 5 | 2 | 141 |
李泰辉 T.H. Li | 4 | 128 | 5 | 4 | 141 |
田呈明 C.M. Tian | 15 | 107 | 7 | 3 | 132 |
刘芳 F. Liu | 8 | 105 | 15 | 1 | 129 |
周丽伟 L.W. Zhou | 10 | 85 | 31 | 2 | 128 |
吴声华 Sheng H. Wu | 9 | 76 | 37 | 3 | 125 |
何双辉 S.H. He | 7 | 76 | 35 | 2 | 120 |
张颖 Y. Zhang | 18 | 46 | 48 | 4 | 116 |
李爱华 A.H. Li | 0 | 110 | 1 | 1 | 112 |
袁海生 H.S. Yuan | 4 | 99 | 6 | 1 | 110 |
梁宗琦 Z.Q. Liang | 2 | 93 | 10 | 1 | 106 |
郭林 L. Guo | 1 | 103 | 1 | 0 | 105 |
范鑫磊 X.L. Fan | 8 | 63 | 29 | 2 | 102 |
表3 2000-2020年中国学者发表新分类单元最多的20个科Table 3 Top 20 families attracting Chinese scholars who have published a large number of new fungal names from 2000 to 2020 |
科 Family | 新属及亚属 New genera and subgenera | 新种及种下单元 New species and infraspecific taxa | 新组合 New combinations | 总数 Total |
---|---|---|---|---|
刺革菌科 Hymenochaetaceae | 7 | 212 | 83 | 302 |
牛肝菌科 Boletaceae | 19 | 169 | 83 | 271 |
亚隔孢壳科 Didymellaceae | 17 | 119 | 102 | 238 |
多孔菌科 Polyporaceae | 17 | 158 | 49 | 224 |
格孢腔菌科 Pleosporaceae | 1 | 176 | 19 | 196 |
蘑菇科 Agaricaceae | 14 | 146 | 19 | 179 |
间座壳科 Diaporthaceae | 2 | 157 | 10 | 169 |
毛壳科 Chaetomiaceae | 18 | 78 | 79 | 175 |
炭角菌科 Xylariaceae | 11 | 128 | 29 | 168 |
毛筒壳科 Tubeufiaceae | 20 | 102 | 44 | 166 |
红菇科 Russulaceae | 6 | 135 | 6 | 147 |
球囊菌科 Mycosphaerellaceae | 3 | 98 | 19 | 120 |
丛赤壳科 Nectriaceae | 4 | 106 | 19 | 129 |
肉座菌科 Hypocreaceae | 0 | 117 | 6 | 123 |
斑痣盘菌科 Rhytismataceae | 1 | 112 | 5 | 118 |
圆盘菌科 Orbiliaceae | 3 | 68 | 29 | 100 |
拟盘多毛孢科 Pestalotiopsidaceae | 0 | 69 | 22 | 91 |
布勒担菌科 Bulleribasidiaceae | 5 | 51 | 33 | 89 |
曲霉科 Aspergillaceae | 1 | 91 | 2 | 94 |
鹅膏科 Amanitaceae | 1 | 83 | 4 | 88 |
表4 2000-2020年中国学者不合格或不合法发表名称的类型和数量Table 4 Invalid and illegitimate names published by Chinese scholars from 2000 to 2020 |
名称类型 Type of names | 违反的命名法规条款 Violated articles in code | 主要存在的问题 Major problems | 名称数量 Number of names |
---|---|---|---|
不合法 Illegitimate name | 52.1 | 命名多余名称 Nomenclaturally superfluous names | 12 |
不合法 Illegitimate name | 53.1 | 晚出同名,与更早发表的名称拼写完全相同 Later homonym | 40 |
不合格 Invalid name | 38.1 | 没有写出或引证描述和特征集要 New taxon published without a description or diagnosis | 10 |
不合格 Invalid name | 39.1 | 在2011年12月31日前发表的名称,没有写出或引证拉丁文描述和特征集要 Before 31 December 2011, a new taxon is published without a Latin description or diagnosis | 25 |
不合格 Invalid name | 40.1 | 属或以下等级的新分类群名称,没有指明命名模式 The type is not indicated when a new taxon at the rank of genus or below is published | 32 |
不合格 Invalid name | 40.6 | 属或以下等级的新分类群名称,指定模式时没有注明“typus[模式]”或“holotypus[主模式]”、或其同义等同语 One of the words “typus” or “holotypus”, or its equivalent in a modern language is not included when a new taxon at the rank of genus or below is published | 24 |
不合格 Invalid name | 40.7 | 新种或种下分类群名称,没有指明或指出了多于1个模式保存的标本馆或收藏机构 The single herbarium or conserved institution in which the type is conserved is not specified when a new species or infraspecific taxon is published | 108 |
不合格 Invalid name | 41.5 | 发表新组合时,没有完整的引证其基名或被替代异名 The basionym or replaced synonym is not clearly indicated when a new combination is published | 63 |
不合格 Invalid name | F.5.1 | 没有引证名称注册号 Without citation of an identifier issued by a recognized repository for the new name | 25 |
不合格 Invalid name | 其他不合格发表条款 Other articles involving invalidly published names | 42 |
表5 2000-2020年中国各省发现的菌物新物种数量Table 5 The number of discovered new fungal species from different provinces from 2000 to 2020 |
省 Province | 新物种数量 Number of new species | 省 Province | 新物种数量 Number of new species | 省 Province | 新物种数量 Number of new species |
---|---|---|---|---|---|
云南 Yunnan | 1 345 | 江西 Jiangxi | 106 | 甘肃 Gansu | 63 |
海南 Hainan | 378 | 湖南 Hunan | 105 | 辽宁 Liaoning | 61 |
台湾 Taiwan | 355 | 陕西 Shaanxi | 105 | 山东 Shandong | 60 |
广东 Guangdong | 320 | 北京 Beijing | 105 | 河北 Hebei | 33 |
广西 Guangxi | 275 | 新疆 Xinjiang | 101 | 江苏 Jiangsu | 31 |
贵州 Guizhou | 249 | 安徽 Anhui | 97 | 山西 Shanxi | 31 |
四川 Sichuan | 229 | 青海 Qinghai | 85 | 宁夏 Ningxia | 23 |
西藏 Xizang | 208 | 黑龙江 Heilongjiang | 77 | 重庆 Chongqing | 17 |
湖北 Hubei | 148 | 浙江 Zhejiang | 71 | 上海 Shanghai | 1 |
香港 Hong Kong | 123 | 内蒙古 Inner Mongolia | 64 | 天津 Tianjin | 1 |
福建 Fujian | 113 | 河南 Henan | 63 | 澳门 Macao | 0 |
吉林 Jilin | 113 |
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The first large-scaled survey of soil-inhabiting Trichoderma is conducted in 23 provinces of China. Twenty-three new species belonging to the green-ascospored clades are discovered. Their phylogenetic positions are determined by sequence analyses of the combined partial sequences of translation elongation factor 1-alpha and the second largest RNA polymerase subunit encoding genes. Morphology and culture characteristics are observed, described and illustrated in detail. Distinctions between the new species and their close relatives are compared and discussed. They are named as: T. aggregatum, T. alpinum, T. bannaense, T. breve, T. brevicrassum, T. byssinum, T. chlamydosporicum, T. concentricum, T. ganodermatis, T. hainanense, T. hengshanicum, T. hirsutum, T. hunanense, T. ingratum, T. liberatum, T. linzhiense, T. longisporum, T. polypori, T. pseudodensum, T. simplex, T. solum, T. undatipile and T. zayuense.
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Publications dealing with Chinese fungal species were systematically investigated, and 2,849 new species, 129 new varieties and 5,260 new Chinese records have been reported during 1978 to 2010. “Sylloge Fungorum Sinicorum” was published in 1979, listed 6,737 species and 168 varieties based on the reports on Chinese fungal resource until 1973. So 14,846 species and 297 varieties have been found in mainland China by 2010. In addition, 2,122 fungal species were recorded in Hong Kong and 6,207 in Taiwan, among which around 800 and 400 species, respectively, were not found in mainland China so far. Until now there are 16,046 species and 297 varieties have been recorded in the Chinese territory. If 10% of them are the synonyms, the Chinese fungal species are around 14,700. Among them around 300 species are Chromista, 340 are Protoza, and 14,060 are Fungi.
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In a preliminary analysis, 21 Colletotrichum strains with large conidia preserved in the CBS culture collection clustered with a recently described species, C. gigasporum, forming a clade distinct from other currently known Colletotrichum species complexes. Multi-locus phylogenetic analyses (ITS, ACT, TUB2, CHS-1, GAPDH) as well as each of the single-locus analyses resolved seven distinct species, one of them being C. gigasporum. Colletotrichum gigasporum and its close allies thus constitute a previously unknown species complex with shared morphological features. Five of the seven species accepted in the C. gigasporum species complex are described here as novel species, namely C. arxii, C. magnisporum, C. pseudomajus, C. radicis and C. vietnamense. A species represented by a single sterile strain, namely CBS 159.50, was not described as novel species, and is treated as Colletotrichum sp. CBS 159.50. Furthermore, C. thailandicum is reduced to synonymy with C. gigasporum.
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Ustilaginomycotina (Basidiomycota, Fungi) has been reclassified recently based on multiple gene sequence analyses. However, the phylogenetic placement of two yeast-like genera Malassezia and Moniliella in the subphylum remains unclear. Phylogenetic analyses using different algorithms based on the sequences of six genes, including the small subunit (18S) ribosomal DNA (rDNA), the large subunit (26S) rDNA D1/D2 domains, the internal transcribed spacer regions (ITS 1 and 2) including 5.8S rDNA, the two subunits of RNA polymerase II (RPB1 and RPB2) and the translation elongation factor 1-alpha (EF1-alpha), were performed to address their phylogenetic positions. Our analyses indicated that Malassezia and Moniliella represented two deeply rooted lineages within Ustilaginomycotina and have a sister relationship to both Ustilaginomycetes and Exobasidiomycetes. Those clades are described here as new classes, namely Moniliellomycetes with order Moniliellales, family Moniliellaceae, and genus Moniliella; and Malasseziomycetes with order Malasseziales, family Malasseziaceae, and genus Malassezia. Phenotypic differences support this classification suggesting widely different life styles among the mainly plant pathogenic Ustilaginomycotina.
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Mushrooms in the basidiomycete family Boletaceae are ecologically and economically very important. However, due to the morphological complexity and the limited phylogenetic information on the various species and genera of this fungal family, our understanding of its systematics and evolution remains rudimentary. In this study, DNA sequences of four genes (nrLSU, tef1-alpha, rpb1, and rpb2) were newly obtained from ca. 200 representative specimens of Boletaceae. Our phylogenetic analyses revealed seven major clades at the subfamily level, namely Austroboletoideae, Boletoideae, Chalciporoideae, Leccinoideae, Xerocomoideae, Zangioideae, and the Pulveroboletus Group. In addition, 59 genus-level clades were identified, of which 22 were uncovered for the first time. These 22 clades were mainly placed in Boletoideae and the Pulveroboletus Group. The results further indicated that the characters frequently used in the morphology-based taxonomy of Boletaceae, such as basidiospore ornamentation, the form of the basidioma, and the stuffed pores each had multiple origins within the family, suggesting that the use of such features for high-level classification of Boletaceae should be de-emphasized and combined with other characters.
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Species of the genus Phylloporus in China were investigated based on morphology and molecular phylogenetic analysis of a three-locus (nrLSU, ITS and tef-1a) DNA sequence dataset. Twenty-one phylogenetic species were recognized among the studied collections. Seven of them are described as new: P. brunneiceps, P. imbricatus, P. maculatus, P. pachycystidiatus, P. rubeolus, P. rubrosquamosus, and P. yunnanensis. In addition, four of them correspond with the previous morphology-based taxa: P. bellus, P. luxiensis, P. parvisporus, and P. rufescens. The remaining ten phylogenetic species were not described due to the paucity of the materials. A key to the Chinese morphologically recognizable taxa was provided. A preliminary biogeographical analysis showed that (1) Pylloporus species in East Asia and Southeast Asia are mostly closely related, (2) species pairs or closely related species of Phylloporus between East Asia and North/Central America are relatively common, and (3) the biogeographic relationship of Phylloporus between East Asia and Europe was supported by only a single species pair. Unexpectedly, no taxa common either to both Europe and East Asia, or to both East Asia and North/Central America, were uncovered. Clades look to have taxa from both sides of the Pacific and Europe/Asia though.
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Three new resupinate, poroid, wood-inhabiting fungi, Perenniporia aridula, P. bannaensis and P. substraminea, are introduced on the basis of morphological and molecular characters. Molecular study based on sequence data from the ribosomal ITS and LSU regions supported the three new species' positions in Perenniporia s.s., and all of them formed monophyletic lineages with strong support (100 % BP, 1.00 BPP). Phylogenetic analysis revealed seven clades for the 31 species of Perenniporia s.l. used in this study. Among them, Perenniporiella clustered with Perenniporia ochroleuca group, and then subsequently grouped with Abundisporus. In addition, the P. ochroleuca group, the P. vicina group, the P. martia group and P. subacida formed well supported monophyletic entities, which could be recognized as distinct genera, and they are not related to P. medulla-panis which belongs to Perenniporia s.s. clade. An identification key to 38 species of Perenniporia occurring in China is provided.
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据作者对1978年以来国内外主要菌物学期刊和专著进行的系统搜集,中国大陆发表的菌物累计有2,849新种,129新变种,5,260新记录种。若加上戴芳澜编著的《中国真菌总汇》所记载的6,737种和168变种,中国大陆已知菌物计14,846种297变种。据不完全统计,香港和台湾报道的菌物种类中分别约有800种和400种在中国大陆未曾记载,因此全国总计已知菌物应为16,046种297变种。假设其中有10%为同物异名,则目前我国菌物已知种数约为14,700种,其中管毛生物界(主要是卵菌)约300种,原生动物界(主要是黏菌)约有340种,真菌约14,060种。
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姚一建, 魏江春, 庄文颖, 蔡蕾, 刘冬梅, 李俊生, 魏铁铮, 李熠, 王科, 吴海军, 2020. 中国大型真菌红色名录评估研究进展. 生物多样性, 28(1):4-10
大型真菌具有重要的生态价值和经济价值, 但由于环境污染、气候变化、生境丧失与破碎化, 以及资源过度利用等因素, 其生物多样性受到严重威胁。为了全面评估中国大型真菌的生存状况, 国家生态环境部(原环境保护部)联合中国科学院于2016年启动了《中国生物多样性红色名录——大型真菌卷》的编制工作。经广泛和全面收集文献资料, 依据IUCN物种红色名录等级与标准, 结合大型真菌特点和国内研究现状, 制定了中国大型真菌红色名录评估方法和流程, 动员和组织了全国相关研究力量, 对9,302种大型真菌的受威胁状况进行了评估。结果显示, 中国大型真菌受威胁物种(包括疑似灭绝、极危、濒危、易危)共97个, 占被评估物种总数的1.04%; 近危101种, 占总数的1.09%; 无危2,764种, 占总数的29.71%; 数据不足6,340种, 占总数的68.16%。此次评估工作汇集了全国140多位专家的智慧, 是国内外迄今为止涉及物种数量最大、类群范围最宽、覆盖地域最广、参与人员最多的一次大型真菌生存状况评估, 对我国大型真菌多样性保护与管理具有重要意义。
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姚一建研究员、马克平研究员对本文部分内容给予过建议,赵明君女士提供过数据库相关技术协助,特致以谢意。
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