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菌物学报, 2022, 41(4): 587-600 doi: 10.13346/j.mycosystema.210352

研究论文

蓝光和蛋白酶体抑制剂MG132处理对蛹虫草CmfrqCmwc-1Cmwc-2转录水平的影响

丰磊,#, 李晓然#, 付鸣佳,,1,*, 黄紫妍1, 魏伟群2, 肖世平2

1 江西师范大学生命科学学院,江西 南昌 330022

2 江西天佳生物工程股份有限公司,江西 南昌 330200

Effects of blue light and proteasome inhibitor MG132 treatments on the transcription of Cmfrq, Cmwc-1 and Cmwc-2 in Cordyceps militaris

FENG Lei,#, LI Xiaoran#, FU Mingjia,,1,*, HUANG Ziyan1, WEI Weiqun2, XIAO Shiping2

1 College of Life Sciences, Jiangxi Normal University, Nanchang 330022, Jiangxi, China

2 Jiangxi Tianjia Bioengineering Co., Ltd., Nanchang 330200, Jiangxi, China

收稿日期: 2021-08-25   接受日期: 2021-10-21  

基金资助: 国家自然科学基金(31760601)
南昌市重大科技攻关项目(2020)

Corresponding authors: * mingjiafu@126.com ORCID: FU Mingjia (0000-0003-1592-1104)

First author contact:

#Contributed equally to this article.

Received: 2021-08-25   Accepted: 2021-10-21  

Fund supported: National Natural Science Foundation of China(31760601)
Nanchang Major Science and Technology Project(2020)

作者简介 About authors

ORCID:FENGLei(0000-0002-2623-3465) 。

摘要

生物钟的节律振荡器主要成分之间的关系构成了转录-翻译负反馈环,并以此调控生物体的生理生化反应和生长发育等。以不同时间的蓝光照射和蛋白酶体抑制剂MG132处理蛹虫草菌丝体,通过实时荧光PCR分析其中节律振荡器主要成分的3个基因CmfrqCmwc-1Cmwc-2转录水平变化,以期确定3个基因在蛹虫草中的相互关系和变化规律。研究表明,持续的黑暗情况下,MG132对Cmfrq转录水平的影响比较大,对Cmwc-1Cmwc-2转录水平的影响有限。在黑暗培养过程中2 h的蓝光间断条件下,无MG132处理培养后期Cmfrq转录水平急剧下降,Cmwc-1转录水平却急剧上升,CmfrqCmwc-1转录水平呈现生物振荡器负反馈调控特点;Cmfrq转录水平受营养条件的影响,加MG132处理后使得Cmfrq转录对营养的改变不敏感。持续的蓝光照射培养条件下,无MG132处理时Cmfrq转录水平在后期也出现急剧的下降,Cmfrq转录对MG132处理更为敏感;无论有或无MG132处理,这3个基因之间均没有反映出生物振荡器负反馈环的特点。在蓝光12 h和黑暗12 h的周期交替条件下,前后2个周期这3个基因的转录水平出现不一致的情况,由持续黑暗进入周期交替时,Cmfrq转录水平由高到低;在第2个周期时Cmwc-1Cmwc-2转录水平均非常低,但MG132导致Cmwc-1Cmwc-2转录水平升高。与黑暗条件相比,蓝光处理可以导致Cmfrq转录水平升高。Cmwc-1转录水平在多数情况下均非常低,表明该基因是生物振荡器中的关键基因。

关键词: 蛹虫草; 蓝光; 蛋白酶体抑制剂; 基因转录水平

Abstract

The relationship between the main components of the circadian oscillator of circadian clock constitutes a transcription-translation negative feedback loop which regulates the physiology, biochemistry, growth and development of the organisms. The mycelium of Cordyceps militaris was treated with different time of blue light irradiation and proteasome inhibitor MG132, and the transcriptional changes of three genes Cmfrq, Cmwc-1 and Cmwc-2, the main components of the circadian oscillator, were analyzed by real-time fluorescent PCR, in order to determine the relationship and variation rule of the three genes in C. militaris. Under the condition of continuous darkness, MG132 has a relatively notable impact on the transcription levels of Cmfrq, but a limited impact on the transcription levels of Cmwc-1 and Cmwc-2. In the process of dark culture, under the condition of 2 h blue light interruption, the Cmfrq transcription level decreased sharply in the later period of culture without MG132 treatment, while the transcription level of Cmwc-1 increased sharply. The Cmfrq and Cmwc-1 transcription levels showed the characteristics of circadian oscillator negative feedback regulation. The transcriptional level of Cmfrq is affected by nutrient conditions, and the addition of MG132 made Cmfrq transcription insensitive to nutrient changes. Under the condition of continuous blue light irradiation, the Cmfrq transcription level also showed a sharp decline in the later period without MG132 treatment, and Cmfrq transcription was more sensitive to MG132 treatment. With or without MG132 treatment, the three genes did not reflect the characteristics of circadian oscillator negative feedback loop. Under the cycle alternation of blue light 12 h and dark 12 h, the transcriptional levels of these three genes were inconsistent between the two cycles. When continuous darkness entered the cycle alternation, Cmfrq transcriptional levels were from high to low. In the second cycle, the transcription levels of Cmwc-1 and Cmwc-2 were very low, but MG132 led to the increase of the transcription levels of Cmwc-1 and Cmwc-2. Compared with dark conditions, blue light treatment can lead to increase Cmfrq transcription levels. The transcription level of Cmwc-1 is very low in most cases, indicating that this gene is a key gene in the circadian oscillator.

Keywords: Cordyceps militaris; blue light; proteasome inhibitor; gene transcription levels

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丰磊, 李晓然, 付鸣佳, 黄紫妍, 魏伟群, 肖世平. 蓝光和蛋白酶体抑制剂MG132处理对蛹虫草CmfrqCmwc-1Cmwc-2转录水平的影响[J]. 菌物学报, 2022, 41(4): 587-600 doi:10.13346/j.mycosystema.210352

FENG Lei, LI Xiaoran, FU Mingjia, HUANG Ziyan, WEI Weiqun, XIAO Shiping. Effects of blue light and proteasome inhibitor MG132 treatments on the transcription of Cmfrq, Cmwc-1 and Cmwc-2 in Cordyceps militaris[J]. Mycosystema, 2022, 41(4): 587-600 doi:10.13346/j.mycosystema.210352

生物钟(circadian clock)存在于各种真核生物中,调控多种生理活动和分子活性。生物钟是基于转录-翻译负反馈环的自主振荡器,在时间上协调从基因转录到代谢的一系列过程,已经发现存在于动物、植物、真菌和部分原核生物中(Dunlap 1999;Bell-Pedersen et al. 2005)。昼夜节律振荡器(circadian oscillator)是生物钟的核心组成,生物钟由一个或多个昼夜节律振荡器组成,它对生物钟起调节控制作用,对昼夜节律的变化有影响,具有使生物体与外界环境保持同步的功能(Li 1983)。通常生物钟生成一个24 h的持续性程序,适应环境因子发生的变化,从分子水平上反应对环境中的光和温度的影响,并介导与环境保持同步(Ripperger & Schibler 2001)。

在真菌中,生物钟相关的研究更多地来自粗糙脉孢菌Neurospora crassa Shear & B.O. Dodge。脉孢菌中的昼夜节律振荡器由自动调节的负反馈环构成,包含有4个核心成分,即FRQ (frequency)、FRH (FRQ interacting RNA helicase)、WC-1 (white collar-1)和WC-2 (Dunlap 1999;Dunlap & Loros 2004;Liu & Bell-Pedersen 2006;Heintzen & Liu 2007)。

在负反馈环中,钟蛋白FRQ和FRH的复合物FFC作为环中的负调控因子,而蓝光受体蛋白WC-1和WC-2通过PAS (PER-ARNT-SIM)域结合成复合物WCC成为环中的正调控因子。行使功能的时候,在持续的黑暗中,WCC结合到钟基因frq启动子的2个顺式元件上,以激活frq的转录(Crosthwaite et al. 1997;Talora et al. 1999;Cheng et al. 2001b;Cheng et al. 2002;Cheng et al. 2003b;Froehlich et al. 2003)。另一方面,FFC通过抑制WCC的活性来抑制frq转录。在FRQ进一步磷酸化和降解以后,WCC的再激活导致了frq的再激活和新周期的开始,更具体地说,随着FRQ的逐渐磷酸化,其对WCC的负调控逐渐减弱,最终随着新一轮FRQ转录周期的启动而降解(Larrondo et al. 2015)。因此,这个负反馈环产生内源性的由frq-mRNA和FRQ蛋白调节节律的近24 h昼夜振荡。除了在昼夜节律负反馈环中发挥重要作用外,WC-1也是负责昼夜节律传导和所有其他已知光反应的蓝光受体,表明了光输入和昼夜节律振荡器之间的联系(Froehlich et al. 2002;He et al. 2002;Cheng et al. 2003a;He & Liu 2005)。除了负反馈环中正调控因子和负调控因子之间的相互协调作用以外,研究也发现同二聚体FRQ通过与WCC复合物的物理相互作用来抑制自己的转录(Aronson et al. 1994;Cheng et al. 2001a;Denault et al. 2001;Froehlich et al. 2003)。

在本研究中,所用材料蛹虫草Cordyceps militaris (L.) Fr.与粗糙脉孢菌同为子囊菌,相关研究结果可以与粗糙脉孢菌的结果进行对比。蛋白酶体抑制剂MG132是一种可逆的醛基肽类特异性蛋白酶体抑制剂,能够选择性地阻断泛素-蛋白酶途径。前期研究用MG132处理蛹虫草进行了形态观察,表明其对蛹虫草的形态影响明显,直观地确定了该试剂可以用于蛹虫草中蛋白质泛素化方面的研究(丰磊等 2021)。本研究对蛹虫草中的钟基因Cmfrq、蓝光受体基因Cmwc-1Cmwc-2进行蓝光和MG132处理后的转录水平分析。

1 材料与方法

1.1 菌种和主要试剂

蛹虫草菌种由实验室保存。蛋白酶体抑制剂MG132购于大连美仑生物技术有限公司,TRIzol购于生工生物工程(上海)股份有限公司;Fungal RNA Kit、Recombinant DNaseⅠ、第一链cDNA合成试剂盒、PrimeScript® RT reagent Kit With gDNA Eraser和SYBR® Premix Ex Taq Ⅱ均购于宝生物工程(大连)有限公司。

1.2 不同条件下蛹虫草菌丝体的培养

1.2.1 含有不同浓度MG132的PDA培养基上菌丝体的培养

将菌种接种在含有0、2、4、6、8、10、40、60和80 μmol/L MG132的PDA平板培养基上,25 ℃恒温培养箱培养,前4 d黑暗培养,第5天打开蓝光照射,培养第7天全部取样放入-60 ℃冰箱冻存。

1.2.2 黑暗和10 μmol/L MG132处理条件下菌丝体培养

将菌种接种于含有10 μmol/L MG132的PDA平板培养基上,25 ℃恒温培养箱培养;由于菌丝体培养的前4 d量比较少,因此从培养的第5天开始取样(下同),每天在同一时间取样,连续取样10 d,全部样品放入-60 ℃冰箱冻存,留待以后共同提取RNA。以不加MG132的PDA培养基上相应培养的蛹虫草菌丝体作为对照CK。

1.2.3 黑暗培养过程中2 h蓝光间断且10 μmol/L MG132处理条件下菌丝体的培养

将菌种接种在含有10 μmol/L MG132的PDA平板培养基上,25 ℃恒温培养箱培养;前4 d对菌丝体进行黑暗培养,第5天打开蓝光照射,照射2 h后关闭蓝光,部分样品直接取样,其他样品重新置于黑暗中培养,每天同一时间取样,连续取样10 d,全部样品放入-60 ℃冰箱冻存,留待以后共同提取RNA。以不加MG132的PDA培养基上相应培养的蛹虫草菌丝体作为对照CK。

1.2.4 蓝光照射和10 μmol/L MG132处理条件下菌丝体的培养

将菌种接种在含有10 μmol/L MG132的PDA平板培养基上,25 ℃恒温培养箱培养;前4 d对菌丝体进行黑暗培养,第5天开始蓝光照射并进行持续培养,从第5天开始取样(取样当天蓝光照射2 h),每天在同一时间取样,连续取样10 d,全部样品放入-60 ℃冰箱冻存,留待以后共同提取RNA。以不加MG132的PDA培养基上相应培养的蛹虫草菌丝体作为对照CK。

1.2.5 蓝光和黑暗交替且10 μmol/L MG132处理条件下菌丝体的培养

将菌种接种在含有10 μmol/L MG132的PDA平板培养基上,25 ℃恒温培养箱中培养;第6天开始蓝光照射,采用蓝光12 h-黑暗12 h-蓝光12 h-黑暗12 h交替培养48 h,期间每隔2 h取一次样,共取样24组。以不加MG132的PDA培养基上相应培养的蛹虫草菌丝体作为对照CK。

1.3 蛹虫草菌丝体和子实体总RNA的提取与cDNA 第一链的合成

-60 ℃保存样品取出后,取0.05-0.1 g样品在-60 ℃预冷的研砵中充分研磨,迅速加入1 mL TRIzol,氯仿去除蛋白质等杂质,异丙醇沉淀总RNA和75%酒精洗涤,最后获得蛹虫草总RNA。DNA的去除和荧光定量cDNA第一链的合成采用PrimeScript® RT reagent Kit With gDNA Eraser试剂盒,操作过程参照说明书。

1.4 引物设计

按照实时荧光定量PCR引物的要求,根据Cmfrq (GenBank:KF971860.1)、Cmwc-1 (GenBank:JX845417.1)和Cmwc-2 (GenBank:JX852619.1)基因序列设计引物。其中Cmfrq实时荧光定量PCR引物为FRQF (5ʹ-TGGAGCAATCGGACGACTAT C-3ʹ)和FRQR (5ʹ-ACCGCCACCTCATCACCCA C-3ʹ);Cmwc-1实时荧光定量PCR引物为WC-1F (5ʹ-TTGGCGGCAGATCAAGGAT-3ʹ)和WC-1R (5ʹ-TGCTCTGAAGGCTGAAACCC-3ʹ);Cmwc-2实时荧光定量PCR引物为WC-2F (5ʹ-GCCCTCCACC ACTACCG-3ʹ)和WC-2R (5ʹ-CGGAGTCGTCAAA GCCA-3ʹ)。以3-磷酸-甘油醛脱氢酶(glyceraldehyde- 3-phosphate dehydrogenase,GAPDH) (GenBank:FJ374269.1)为内标基因,其引物为G1 (5ʹ-GCCG AGGAAACAACAGAA-3ʹ)和G2 (5ʹ-GCAGTCGT GGCAAGGAT-3ʹ)。

1.5 Real-time PCR分析蛹虫草Cmfrq、Cmwc-1和Cmwc-2的相对转录水平

采用两步法的PCR扩增程序:95 ℃预变性20 s,95 ℃ 5 s和60 ℃ 34 s进行循环,40个循环。Real-time PCR 在Step One PCR System (杭州博日生物科技有限公司)上完成,用试剂盒SYBR® Premix Ex Taq Ⅱ进行荧光标记,按说明书进行。每个反应设置3个重复,取平均值,用ΔCT法处理数据:目标基因/管家基因=2-ΔCT,ΔCT=CT目标基因- CT管家基因,计算目的基因的相对转录水平。

2 结果与分析

2.1 蛹虫草总RNA的提取

采用TRIzol试剂对蛹虫草菌丝体进行RNA提取,提取的RNA经琼脂糖凝胶电泳后,可以清晰地看到28S和18S条带,表明所提取的RNA质量较好,无明显降解,可用于实时荧光定量PCR分析(图1)。

图1

图1   蛹虫草菌丝体总RNA的电泳分析

Fig. 1   Total RNA electrophoresis analysis of Cordyceps militaris mycelium.


2.2 不同浓度MG132和蓝光处理对Cmfrq、Cmwc-1和Cmwc-2转录水平的影响和MG132使用浓度的确定

蛹虫草菌丝体在25 ℃经过4 d黑暗培养后蓝光培养3 d,进行实时荧光PCR分析。结果表明,MG132浓度为实验的各浓度时,CmfrqCmwc-1Cmwc-2均有相应的表达(图2A-2C)。但是,CmfrqCmwc-1Cmwc-2的相对表达量与MG132浓度并无一致性。综合来看,确定后续研究中MG132处理菌丝体的浓度为10 μmol/L。

图2

图2   不同浓度MG132和蓝光处理对Cmfrq (A)、Cmwc-1 (B)和Cmwc-2 (C)基因转录水平的影响

Fig. 2   Effects of different concentration of MG132 treatment on Cmfrq (A), Cmwc-1 (B) and Cmwc-2 (C) transcription levels under blue light irradiation.


2.3 黑暗条件下10 μmol/L MG132对蛹虫草Cmfrq、Cmwc-1和Cmwc-2转录水平的影响

蛹虫草接种在含有10 μmol/L MG132的PDA培养基上,25 ℃黑暗条件下培养至第5天开始取样,每天同一时间取样,连续取样10 d,实时荧光PCR对CmfrqCmwc-1Cmwc-2这3个基因进行转录水平分析。比较分析表明,Cmfrq基因受MG132的影响,仅在培养的第9天有一个比未加MG132的对照组高出许多的转录水平(图3A);Cmwc-1基因受MG132的影响,大多数情况下都比对照组转录水平低,但无论是加MG132的实验组还是未加MG132的对照组,转录水平均非常低,实验组和对照组的转录水平差异不明显(图3B);在取样的前2 d即培养的第5天和第6天,对照组和MG132处理组Cmwc-2基因转录均出现差异和波动,培养的第7天以后,对照组和MG132处理组的转录水平差异不大,且均处于一个较低的转录水平(图3C),说明MG132对Cmwc-2转录水平的影响有限。

图3

图3   黑暗条件下10 μmol/L MG132对Cmfrq (A)、Cmwc-1 (B)和Cmwc-2 (C)转录水平的影响

Fig. 3   Effects of 10 μmol/L MG132 treatment on Cmfrq (A), Cmwc-1 (B) and Cmwc-2 (C) transcription levels under dark condition.


在生物钟的生物振荡器中,CmFRQ为负调控蛋白,CmWC-1和CmWC-2为正调控蛋白。在对照组中,Cmwc-1Cmwc-2前期的转录水平升高(培养的第6天)促进了Cmfrq转录水平的振荡上行(图3A,3B,3C)。

MG132为蛋白酶体抑制剂,能够使蛋白质泛素化降解受抑制。在MG132处理组中,第8-10天的Cmfrq转录水平急剧升高使细胞中聚集了一定量的未降解的CmFRQ,由此也使Cmwc-1Cmwc-2在随后的一段时间内转录水平都不高(图3A,3B,3C)。

2.4 蓝光照射条件下10 μmol/L MG132对Cmfrq、Cmwc-1和Cmwc-2转录水平的影响

2.4.1 黑暗培养过程中2 h蓝光间断条件下,10 μmol/L MG132对Cmfrq、Cmwc-1和Cmwc-2转录水平的影响

蛹虫草接种在含有10 μmol/L MG132的PDA培养基上,黑暗条件下培养第5天的菌丝体进行蓝光照射2 h后第一次取样,剩余菌丝体样品重新置于黑暗中培养,每天同一时间取样,连续取样10 d,进行实时荧光PCR分析。其中Cmfrq转录水平受MG132的影响,在培养的前12 d大部分时间均低于对照组的转录水平,第12天以后MG132处理组的转录水平开始快速升高,对照组的转录水平急剧下降(图4A);Cmwc-1基因的转录水平在前12 d受MG132的影响不大,对照组和MG132处理组转录水平非常接近,但在第12天以后,对照组的转录水平急剧升高,而MG132处理组的转录水平变化不大(图4B);Cmwc-2在不加MG132的对照组中转录量起伏不大,但在加MG132的处理组中前10 d有一个转录量降低的过程,但在第10天以后转录量出现一个振荡上行的过程(图4C)。

图4

图4   蛹虫草菌丝体黑暗培养过程中2 h蓝光间断条件下,10 μmol/L MG132处理对Cmfrq (A)、Cmwc-1 (B)和Cmwc-2 (C)转录水平的影响

Fig. 4   Effects of 10 μmol/L MG132 treatment on Cmfrq (A), Cmwc-1 (B) and Cmwc-2 (C) transcription levels under dark culture condition of Cordyceps militaris mycelium with 2 h blue light interruption.


总体来看,不加MG132的对照组中,在培养的第12天开始Cmfrq转录水平急剧下降,Cmwc-1转录水平却急剧上升,出现了明显的生物振荡器中转录联动现象,但对Cmwc-2转录水平影响不大(图4A,4B,4C)。

在MG132处理组中,Cmfrq转录水平在后期出现一个上行趋势,Cmwc-2转录水平也是如此,但Cmwc-1转录水平却起伏不大(图4A,4B,4C)。由此推测,MG132处理组中CmfrqCmwc-1Cmwc-2基因转录失去了正调控和负调控的联动效应。

2.4.2 持续蓝光照射条件下10 μmol/L MG132对Cmfrq、Cmwc-1和Cmwc-2转录的影响

蛹虫草接种在含有10 μmol/L MG132的PDA培养基上,黑暗条件下培养第5天的菌丝体进行蓝光照射2 h后第一次取样,剩余菌丝体样品仍进行持续的蓝光照射培养,每天同一时间取样,连续取样10 d,进行实时荧光PCR分析。结果表明,Cmfrq转录水平在MG132处理组中总体低于不加MG132的对照组(图5A);Cmwc-1的转录水平在MG132处理组和对照组的转录水平只在第5-7天有一定差异以外,其他时间段的转录水平均比较接近(图5B);Cmwc-2的转录水平在MG132处理组前期(第7天之前)比对照组略低,但在之后有2个转录高峰,转录水平超过对照组(图5C)。

图5

图5   持续蓝光照射条件下10 μmol/L MG132对Cmfrq (A)、Cmwc-1 (B)和Cmwc-2 (C)转录水平的影响

Fig. 5   Under continuous blue light irradiation, effects of 10 μmol/L MG132 treatment on Cmfrq (A), Cmwc-1 (B) and Cmwc-2 (C) transcription levels.


在未加MG132处理的菌丝体中,Cmfrq的转录水平出现振荡走高,但在后期(蓝光连续培养的第13天)出现急剧下降,这与黑暗培养过程中2 h蓝光间断条件的情形类似。

对照组中CmfrqCmwc-1Cmwc-2基因会表现一定的联动性,Cmwc-1Cmwc-2前期转录量升高(图5B,5C),可以促进后期Cmfrq转录水平的振荡上行(图5A)。在加入MG132处理的菌丝体中,CmfrqCmwc-1Cmwc-2基因的转录难以表现出联动性(图5)。

2.5 不同蓝光光照条件下Cmfrq、Cmwc-1和Cmwc-2转录水平的比较

将结果2.32.4中黑暗培养、黑暗培养过程中蓝光间断2 h培养和持续蓝光照射培养的蛹虫草菌丝体中CmfrqCmwc-1Cmwc-2 3个基因,按照不加MG132的对照与加MG132的处理重新进行转录水平的分析比较。结果表明在不加MG132的对照中:(1)对3个基因转录水平进行比较,黑暗培养过程中蓝光间断照射2 h 和持续的蓝光照射情况下Cmfrq的转录水平基本都高于黑暗时的转录水平,但分别在12 d和13 d后均有快速下降(图6A),说明短期的蓝光照射和持续的蓝光照射在培养的前期会导致Cmfrq转录水平的提高,其中短期的蓝光照射更有利于Cmfrq转录水平的提高,在后期营养条件下降的情况下转录水平急剧下降,但对黑暗情况下Cmfrq转录水平的影响不大且转录水平低(图6A);(2) Cmwc-1的转录水平在这3种光照处理情况下的差异主要出现在前期和后期,其中持续蓝光照射(图6B)在前期(培养的第6天)转录水平突然升高,蓝光照射的前期对Cmwc-1的转录水平有较大影响;黑暗培养过程中蓝光间断照射2 h (图6B)在后期转录水平快速升高,表明蓝光照射后间隔较长时间才对Cmwc-1的转录水平有影响,且这种影响伴随着Cmfrq转录水平的急剧下降(图6A),同时也表明CmfrqCmwc-1转录水平有一定的联动效果。黑暗条件下对Cmwc-1转录水平影响不大(图6B);(3) Cmwc-2的转录水平在这3种情况下的差异主要出现在黑暗处理的前期(图6C),即在第6天有一个大量的转录,其他两种情况无明显波动,且转录量很低;此后3种情况都维持低水平的转录,黑暗培养过程中蓝光中断照射2 h和持续蓝光照射情况下Cmwc-2平均转录水平均高于持续黑暗的转录水平(图6C)。

图6

图6   有、无MG132处理条件下,不同蓝光光照时间对Cmfrq、Cmwc-1和Cmwc-2转录水平影响的分析

A:无MG132处理条件下,不同蓝光光照对Cmfrq转录水平影响的影响;B:无MG132处理条件下,不同蓝光光照对Cmwc-1转录水平影响的分析;C:无MG132处理条件下,不同蓝光光照对Cmwc-2转录水平影响的分析;D:有MG132处理条件下,不同蓝光光照对Cmfrq转录水平影响的影响;E:有MG132处理条件下,不同蓝光光照对Cmwc-1转录水平的影响;F:有MG132处理条件下,不同蓝光光照对Cmwc-2转录水平的影响

Fig. 6   Analyses of the influence of different duration of blue light irradiation on the transcription levels of Cmfrq, Cmwc-1, Cmwc-2 with or without MG132 treatment.

A: The effects of different duration of blue light irradiation on Cmfrq transcription level without MG132 treatment; B: The effects of different duration of blue light irradiation on Cmwc-1 transcription level without MG132 treatment; C: The effects of different duration of blue light irradiation on Cmwc-2 transcription level without MG132 treatment; D: The effects of different duration of blue light irradiation on Cmfrq transcription level with MG132 treatment; E: The effects of different duration of blue light irradiation on Cmwc-1 transcription level with MG132 treatment; F: The effects of different duration of blue light irradiation on Cmwc-2 transcription level with MG132 treatment.


在加10 μmol/L MG132的处理中:(1)总体来看,黑暗培养过程中蓝光间断照射2 h和持续的蓝光照射情况下Cmfrq的转录水平基本都高于黑暗时的转录水平,仅在第9天黑暗时的转录水平有个转录峰。此外,黑暗培养过程中蓝光间断照射2 h的处理,其Cmfrq的转录水平在后期振荡上行(图6D),这与无MG132处理的情况正好相反,表明短暂的蓝光照射和MG132处理可以导致后期Cmfrq转录水平的升高;(2) Cmwc-1的转录水平在这3种蓝光处理情况下,尽管有起伏变化,但总体转录水平均非常低,与对照比较并无急剧变化情况出现(图6E);(3) Cmwc-2的转录水平在黑暗培养的前期(第5天),或者更早时期可能有较高水平的转录,与不加MG132情形类似;此后3种情况都维持低水平转录,黑暗培养过程中蓝光间断照射2 h和持续蓝光照射情况下Cmwc-2平均转录水平要高于持续黑暗的转录水平(图6F),这与不加MG132的情形类似。

2.6 蓝光和黑暗交替条件下10 μmol/L MG132对蛹虫草Cmfrq、Cmwc-1和Cmwc-2基因在菌丝体中转录影响的分析

蛹虫草经过前5 d的黑暗培养后,在第6天早上6:00开始蓝光照射处理,之后每间隔2 h取一次样,在18:00关闭蓝光照射并进入黑暗培养条件下,每间隔2 h取一次样品,如此循环2 d进行蓝光和黑暗交替处理,一共24组样品,进行实时荧光PCR分析。结果表明,在第6天开始进入蓝光照射的12 h中,对照组中Cmfrq基因转录呈下降趋势,在进入黑暗以后的3-4 h达到转录量的低点,随后进行黑暗-蓝光-黑暗的交替中有一个起伏不大的波动;而MG132处理组,从第6天开始进入蓝光照射的12 h中,Cmfrq转录水平以4 h为周期,呈现一个较为剧烈的波动,在进入黑暗以后的6-8 h达到转录量的低点,随后进行黑暗-蓝光-黑暗的交替中有一个起伏不大的波动(图7A)。比较来看,对照和MG132处理Cmfrq转录水平的差异主要出现在前期12 h的蓝光照射,此后有、无MG132处理时Cmfrq转录水平差异不是很明显。

图7

图7   黑暗和蓝光照射交替条件下,10 μmol/L MG132对Cmfrq (A)、Cmwc-1 (B)和Cmwc-2 (C)转录水平的影响

Fig. 7   Effects of 10 μmol/L MG132 on the transcription levels of Cmfrq (A), Cmwc-1 (B) and Cmwc-2 (C) under alternating dark and blue light irradiation.


在第一个蓝光和黑暗周期中,无论是不加MG132的对照组还是加MG132的处理组菌丝体中,Cmwc-1基因均有较微弱的转录,且转录量波动不大(图7B);在进入第2个蓝光和黑暗交替的周期中,对照组中Cmwc-1转录水平极低,而MG132处理组菌丝体中,Cmwc-1的转录水平有少量的增强,出现较小的波动(图7B)。总体而言,任何情况下,Cmwc-1基因的转录都是很微弱的(图7B)。此外,Cmwc-1在进入第2个蓝光和黑暗交替的周期时对照组转录水平极低,分析具体原因可能与Cmfrq转录有关,即Cmfrq转录抑制Cmwc-1转录可能是一个累积效应。

在第一个蓝光和黑暗周期中,虽然对照组和MG132处理组Cmwc-2基因转录量均有波动,但对照组中蓝光照射时Cmwc-2的波动是向上的,在进入黑暗时达到高峰,再波动向下;而MG132处理组中蓝光照射期间,转录量的波动是向上的,而黑暗时期的波动是向下的(图7C)。在进入第2个蓝光和黑暗交替的周期中,对照组中无论是蓝光照射还是黑暗处理的情况下Cmwc-2基因转录量趋于极低或接近于不转录;而在MG132处理组中,蓝光照射时转录量先扬后抑,在进入黑暗期间后,Cmwc-2基因转录量开始快速增加(图7C)。

对3个基因的相关性进行分析,在不加MG132的情况下,Cmfrq基因在检测的2 d中均有转录,而Cmwc-1Cmwc-2只在检测的第1个蓝光和黑暗周期中有转录,在第2个蓝光和黑暗周期中转录水平极低。这表明Cmfrq转录对Cmwc-1Cmwc-2负调控作用主要体现在第2个蓝光和黑暗周期中。而在加MG132的情况下,CmfrqCmwc-1Cmwc-2这3个基因的相关性不明显。

3 讨论

真菌中研究生物钟生物振荡器主要成分之间的关系比较清楚的是在粗糙脉孢菌中(Heintzen & Liu 2007)。蛹虫草与粗糙脉孢菌同属子囊菌,彼此之间相关研究有一定的参照价值。但是,蛹虫草的3个基因CmfrqCmwc-1Cmwc-2与粗糙脉孢菌的3个基因frq (GenBank:U17073.1)、wc-1 (GenBank:X94300.2)和wc-2 (GenBank:Y09119.1)分别只有72.11%、71.23%和70.75%的同源性,势必导致蛹虫草中CmfrqCmwc-1Cmwc-2的转录与粗糙脉孢菌中frqwc-1wc-2的转录存在差异,这种差异必然体现在2种真菌的生物钟调控中。

粗糙脉孢菌作为模式真菌,其负反馈环中日夜调节机制中的正调控因子和负调控因子之间存在此消彼长的关联性。Cha et al. (2007)对粗糙脉孢菌中的相关研究进行了总结,在主观性早晨的持续黑暗中,WC-1和WC-2形成一种异二聚体复合物(D-WCC),该复合物与frq启动子中的时钟调控钟盒(Clock box或C box)结合,导致frq转录激活。frq mRNA在主观性白天达到峰值,FRQ蛋白量在4-6 h后达到峰值。合成FRQ蛋白后,它通过coiled-coil结构域与FRH形成复合物。在细胞核中,FFC抑制D-WCC的活性,导致frq mRNA水平降低;frq mRNA水平在主观性傍晚前后达到低谷。FRQ被磷酸化和去磷酸化后再经蛋白酶体系统泛素化和降解。当FRQ水平在主观性深夜下降到某个阈值以下时,D-WCC不再被FFC抑制,FRQ转录被重新激活以开始新的周期。显然,本文在蛹虫草的日夜交替的研究中,CmfrqCmwc-1Cmwc-2这3个基因的转录水平(图7)没有表现出与粗糙脉孢菌完全相同的变化。此外,在本文的研究中Cmwc-1转录水平一直比较低,成为了蛹虫草生物钟调节机制中的限定因素。由此推测,Cmwc-1转录水平低也导致与粗糙脉孢菌中负反馈环调控上的很大差异。

根据研究结果,在持续的黑暗培养过程中,加MG132和不加MG132对CmfrqCmwc-1Cmwc-2这3个基因的转录水平的影响有限,可以确定MG132作为蛋白酶体抑制剂在黑暗情况下处理蛹虫草菌丝体,在转录水平上不利于进行相关研究。在黑暗培养过程中2 h蓝光间断条件下,培养后期Cmfrq转录水平的急剧下降和Cmwc-1转录水平的急剧上升,反映出生物振荡器中CmFRQ和CmWC-1这2个成分分别为负调控和正调控成分;该条件下Cmfrq转录水平在后期的急剧下降与这个时候营养成分的下降有关,表明Cmfrq转录也受培养基中营养成分的调控,而MG132处理导致生物振荡器失效,使得Cmfrq转录对营养的改变不敏感。在持续的蓝光照射培养条件下,Cmfrq的转录水平在后期也出现急剧下降,表明也受后期营养成分下降影响,而MG132处理可以抑制Cmfrq转录;而有或没有MG132处理对Cmwc-1Cmwc-2这2个基因的转录水平影响的差异有限,且这2种处理情况下这2个基因的转录趋势相近。持续的蓝光处理带来的结果无论是有或无MG132处理均没有反映出生物振荡器成分之间的联动关系,且Cmfrq转录对MG132处理更为敏感。在蓝光12 h和黑暗12 h的周期交替条件下,CmfrqCmwc-1Cmwc-2的转录水平并没有明显地反映出类似粗糙脉孢菌的生物节律性变化,推测蛹虫草的生物钟机制可能较为独特。

研究中发现无论是短暂的蓝光照射还是较长时间的蓝光照射均可导致Cmfrq转录水平大多数情况高于黑暗条件,这表明蓝光有助于Cmfrq转录水平的提高。正常情况下Cmfrq转录水平在蓝光条件下其后期的转录会受到营养条件下降的影响,而MG132可抑制这种对营养条件下降的敏感性。由此推测,蓝光有利于正调控因子的作用,进而促进Cmfrq转录;蛹虫草生物钟的正常运转也受到营养条件的影响。

比较而言,在粗糙脉孢菌中frqwc-1wc-2对生物节律性的影响,更多的研究主要是相关基因的突变和敲除,而后在竞逐管(race tube)中进行分生孢子带(conidial band)观察(Vogel 1964),以此确定生物钟节律性,这种观察方法在对frq基因研究中已有先例(Aronson et al. 1994;Görl et al. 2001),配合Northern杂交确实能够更加准确地反映出基因的转录和生物钟节律性之间的关系(Görl et al. 2001)。但是在蛹虫草中进行类似的研究,很难有明显的分生孢子带出现,需要摸索更好的研究方法。

上述结果仅是对CmfrqCmwc-1Cmwc-2转录水平的分析,考虑到生物振荡器的调控不仅在转录水平上,在翻译水平上、甚至在翻译后的修饰上也进行调控。因此相关研究还要进一步对CmfrqCmwc-1Cmwc-2这3个基因的转录和翻译产物进行细致的分析。

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In the frq-wc-based circadian feedback loops of Neurospora, two PAS domain-containing transcription factors, WHITE COLLAR-1 (WC-1) and WC-2, form heterodimeric complexes that activate the transcription of frequency (frq). FRQ serves two roles in these feedback loops: repressing its own transcription by interacting with the WC complex and positively upregulating the levels of WC-1 and WC-2 proteins. We report here that the steady-state level of WC-1 protein is independently regulated by both FRQ and WC-2 through different posttranscriptional mechanisms. The WC-1 level is extremely low in wc-2 knockout strains, and this low level of expression is independent of wc-1 transcription and FRQ protein expression. In addition, our data show that the PAS domain of WC-2 mediates the interactions of this protein with both WC-1 and FRQ in vivo. Such interactions are essential for maintaining the steady-state level of WC-1 and the proper function of WC-1 and WC-2 in circadian clock and light responses.

Cheng P, Yang Y, Heintzen C, Liu Y, 2001a.

Coiled-coil domain-mediated FRQ-FRQ interaction is essential for its circadian clock function in Neurospora

The EMBO Journal, 20: 101-108

DOI:10.1093/emboj/20.1.101      URL     [本文引用: 1]

Cheng P, Yang Y, Liu Y, 2001b.

Interlocked feedback loops contribute to the robustness of the Neurospora circadian clock

Proceedings of the National Academy of Sciences of the United States of America, 98(13): 7408-7413

[本文引用: 1]

Cheng P, Yang YH, Wang LX, He QY, Liu Y, 2003b.

WHITE COLLAR-1, a multifunctional Neurospora protein involved in the circadian feedback loops, light sensing, and transcription repression of wc-2

Journal of Biological Chemistry, 278: 3801-3808

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Neurospora wc-1 and wc-2: transcription, photoresponses, and the origins of circadian rhythmicity

Science, 276(5313): 763-769

PMID:9115195      [本文引用: 1]

Circadian rhythmicity is universally associated with the ability to perceive light, and the oscillators ("clocks") giving rise to these rhythms, which are feedback loops based on transcription and translation, are reset by light. Although such loops must contain elements of positive and negative regulation, the clock genes analyzed to date-frq in Neurospora and per and tim in Drosophila-are associated only with negative feedback and their biochemical functions are largely inferred. The white collar-1 and white collar-2 genes, both global regulators of photoresponses in Neurospora, encode DNA binding proteins that contain PAS domains and are believed to act as transcriptional activators. Data shown here suggest that wc-1 is a clock-associated gene and wc-2 is a clock component; both play essential roles in the assembly or operation of the Neurospora circadian oscillator. Thus DNA binding and transcriptional activation can now be associated with a clock gene that may provide a positive element in the feedback loop. In addition, similarities between the PAS-domain regions of molecules involved in light perception and circadian rhythmicity in several organisms suggest an evolutionary link between ancient photoreceptor proteins and more modern proteins required for circadian oscillation.

Denault DL, Loros JJ, Dunlap JC, 2001.

WC-2 mediates WC-1-FRQ interaction within the PAS protein-linked circadian feedback loop of Neurospora

The EMBO Journal, 20: 109-117

DOI:10.1093/emboj/20.1.109      URL     [本文引用: 1]

Dunlap JC, 1999.

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Cell, 96(2): 271-290

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Dunlap JC, Loros JJ, 2004.

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Journal of Biological Rhythms, 19(5): 414-424

PMID:15534321      [本文引用: 1]

The eukaryotic filamentous fungus Neurospora crassa has proven to be a durable and dependable model system for the analysis of the cellular and molecular bases of circadian rhythms. Pioneering genetic analyses identified clock genes, and beginning with the cloning of frequency (frq), work over the past 2 decades has revealed the molecular basis of a core circadian clock feedback loop that has illuminated our understanding of circadian oscillators in microbes, plants, and animals. In this transcription/translation-based feedback loop, a heterodimer of the White Collar-1 (WC-1) and WC-2 proteins acts both as the circadian photoreceptor and, in the dark, as a transcription factor that promotes the expression of the frq gene. FRQ dimerizes and feeds back to block the activity of its activators (making a negative feedback loop), as well as feeding forward to promote the synthesis of its activator, WC-1. Phosphorylation of FRQ by several kinases leads to its ubiquitination and turnover, releasing the WC-1/WC-2 dimer to reactivate frq expression and restart the circadian cycle. Light resetting of the clock can be understood through the rapid light induction of frq expression and temperature resetting through the influence of elevated temperatures in driving higher levels of FRQ. Several FRQ- and WC-independent, noncircadian FRQ-less oscillators (FLOs) have been described, each of which appears to regulate aspects of Neurospora growth or development. Overall, the FRQ/white collar complex feedback loop appears to coordinate the circadian system through its activity to regulate downstream-target clock-controlled genes, either directly or via regulation of driven FLOs.

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Science, 297(5582): 815-819

PMID:12098706      [本文引用: 1]

In the fungus Neurospora crassa, the blue light photoreceptor(s) and signaling pathway(s) have not been identified. We examined light signaling by exploiting the light sensitivity of the Neurospora biological clock, specifically the rapid induction by light of the clock component frequency (frq). Light induction of frq is transcriptionally controlled and requires two cis-acting elements (LREs) in the frq promoter. Both LREs are bound by a White Collar-1 (WC-1)/White Collar-2 (WC-2)-containing complex (WCC), and light causes decreased mobility of the WCC bound to the LREs. The use of in vitro-translated WC-1 and WC-2 confirmed that WC-1, with flavin adenine dinucleotide as a cofactor, is the blue light photoreceptor that mediates light input to the circadian system through direct binding (with WC-2) to the frq promoter.

Froehlich AC, Loros JJ, Dunlap JC, 2003.

Rhythmic binding of a WHITE COLLAR-containing complex to the frequency promoter is inhibited by FREQUENCY

Proceedings of the National Academy of Science of the United States of America, 100(10): 5914-5919

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Circadian timekeepers reside in most body cells of Drosophila and mammals. The discovery of new clock genes suggests that circadian oscillations are generated by interconnected feedback loops employing transcriptional and post-translational mechanisms. In mammals, a master pacemaker localized in the suprachiasmatic nucleus synchronizes peripheral clocks via humoral cues. However, restricted feeding can uncouple peripheral oscillators from the suprachiasmatic pacemaker.

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蓝光和蛋白酶体抑制剂MG132对蛹虫草形态的影响

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